# Publications

This section lists preprints, published papers, project repositories, and datasets related to Aeon, both from the Aeon team and the broader research community.

## Research articles

- D. Campagner, J. Bhagat, G. Lopes, L. Calcaterra, A. G. Pouget, A. Almeida, T. T. Nguyen, C. H. Lo, T. Ryan, B. Cruz, F. J. Carvalho, Z. Li, A. Erskine, J. Rapela, O. Folsz, M. Marin, J. Ahn, S. Nierwetberg, S. C. Lenzi, J. D. S. Reggiani, SGEN group – SWC GCNU Experimental Neuroethology Group. (2025). _Aeon: an open-source platform to study the neural basis of ethological behaviours over naturalistic timescales._ bioRxiv. https://doi.org/10.1101/2025.07.31.664513
- J. C. Erlich, M. Rastogi, Q. Yin, I. Orsolic, B. F. Cruz, A. Almeida, C. A. Duan. (2025). _Mice dynamically adapt to opponents in competitive multi-player games._ bioRxiv. https://doi.org/10.1101/2025.02.14.638359

## Datasets

If you use Aeon [datasets](target-sample-datasets) in your research, please cite the [platform paper](aeon-paper:), except where a dataset provides its own citation.

- [Single Mouse Foraging Assay – 2-Hour Sample](https://doi.org/10.5281/zenodo.13881884)
- [Social 0.2/0.3/0.4 Datasets](target-full-datasets): Full datasets from social experiments. 

## Projects using Aeon

:::{note}
Some links may lead to private repositories that are currently restricted to members of the respective research groups.
:::

- Saleem Lab, University College London (2025). _Visual Stimuli._ [Computer software]. GitHub. https://github.com/SaleemLab/VisualStimuli
- Sanna Titus (2025). _Bonsai._ [Computer software]. GitHub. https://github.com/sannatitus/Bonsai (Branco and Margrie Labs, Sainsbury Wellcome Centre)
- L. Schwarz (2025). _Social sleaping acquisition._ [Computer software]. GitHub. https://github.com/Lauraschwarz/social_sleaping_acquisition (O'Keefe Lab, Sainsbury Wellcome Centre)
- Allen Institute for Neural Dynamics (2024). _Pirouette._ [Computer software]. GitHub. https://github.com/AllenNeuralDynamics/Aind.Behavior.Pirouette
- Harris Lab, Sainsbury Wellcome Centre (2024). _Hypnose._ [Computer software]. GitHub. https://github.com/SainsburyWellcomeCentre/hypnose
- Sainsbury Wellcome Centre (2024). _Phields._ [Computer software]. GitHub. https://github.com/SainsburyWellcomeCentre/PhieldsExperiments
- Axel Lab, The Zuckerman Institute, Columbia University; Schoonover Lab, Allen Institute for Neural Dynamics; Fink Lab, Northwestern University (2023). _Delphi._ [Computer software]. GitHub. https://github.com/goatsofnaxos/Delphi
- Rancz Lab, Institut de neurobiologie de la méditerranée (2022). _Vestibular VR._ [Computer software]. GitHub. https://github.com/neurogears/vestibular-vr
- Branco Lab, Sainsbury Wellcome Centre (2022). _Cricket Hunt VR._ [Computer software]. GitHub. https://github.com/BrancoLab/CricketHuntVR
- Sanna Titus (2022). _Spatial Navigation._ [Computer software]. GitHub. https://github.com/sannatitus/spatial_navigation (Branco and Margrie Labs, Sainsbury Wellcome Centre)
- Coen Lab, University College London (n.d.). _Bonsai Workflows._ [Computer software]. GitHub. https://github.com/coenLab/bonsai-workflows
- Keshavarzi Lab, University of Cambridge (n.d.). _Ring._ [Computer software]. GitHub. https://github.com/Keshavarzi-lab/Ring 
- Sainsbury Wellcome Centre (n.d.). _Flexible Navigation Task._ [Computer software]. GitHub. https://github.com/SainsburyWellcomeCentre/flexible-navigation-task
- Sainsbury Wellcome Centre (n.d.). _Joysick ABCD._ [Computer software]. GitHub. https://github.com/SainsburyWellcomeCentre/JoysickABCD
- Sainsbury Wellcome Centre (n.d.). _ThreatLoop Arena._ [Computer software]. GitHub. https://github.com/SainsburyWellcomeCentre/ThreatLoop-arena
- Sainsbury Wellcome Centre (n.d.). _VR ABCD._ [Computer software]. GitHub. https://github.com/SainsburyWellcomeCentre/vr-abcd